Murlet is a multiple alignment tool for RNA sequences using iterative alignment based on Sankoff's algorithm with sharply reduced computational time and momory. Developed by Computational Biology Research Center (CBRC), AIST.

Murlet: a practical multiple alignment tool for structural RNA sequences.

Hisanori Kiryu, Yasuo Tabei, Taishin Kin, and Kiyoshi Asai
Bioinformatics, doi:10.1093/bioinformatics/btm146 [Supplementary Text]
Murlet source code and the dataset used in the paper are provided at

 About Our Project
Murlet is developed by Asai's Lab. in University of Tokyo and Computational Biology Research Center (CBRC), AIST. Murlet is a part of the Project. The Project includes development of software tools and dabases. Visit for more details.
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