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| INTRODUCTION |
| Murlet is a multiple alignment tool for RNA sequences using iterative alignment based on Sankoff's algorithm with sharply reduced computational time and momory. Developed by Computational Biology Research Center (CBRC), AIST. |
| Publication |
| Base pair probability matrices are calculated using the code extracted from the RNAalifold program of Vienna RNA package (version 1.5) for RNAalifold, see Ivo L Hofacker and Martin Fekete and Peter F Stadler Secondary structure prediction for aligned RNA sequences. J Mol Biol. 2002 vol. 319 (18) pp.3724-32 Match probability matrices are calculated using the code extracted from the ProbCons program (version 1.10) for ProbCons, see Chuong B Do, Mahathi S P Mahabhashyam, Michael Brudno, and Serafim Batzoglou. ProbCons: Probabilistic consistency-based multiple sequence alignment. Genome Res, 15(2):33040, 2005. |
| About Our Project |
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Murlet is developed by Asai's Lab. in University of Tokyo and
Computational Biology Research Center (CBRC), AIST.
Murlet is a part of the ncRNA.org Project.
The ncRNA.org Project includes development of software tools and dabases.
Visit www.ncrna.org for more details. Give your comments about this system to scarna@m.aist.go.jp |